PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052533.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 237aa    MW: 25755.5 Da    PI: 10.3338
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052533.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-135096354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r+h+e+ErrRR+riN  +++Lr+llP+       K++Ka+ L ++v+ +k+L
  EcC052533.60 50 RSHKEAERRRRQRINAHLSTLRSLLPST-----SKMDKASLLAQVVHRVKKL 96
                  78*************************7.....6************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.514796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-1350103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-105096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1350100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-1150101No hitNo description
SMARTSM003534.4E-1253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.5E-4141205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDSRPLGLGI PHAGPARPCQ EPPAASVNSI DSADPSLSHM MRKLSMTASR SHKEAERRRR  60
QRINAHLSTL RSLLPSTSKM DKASLLAQVV HRVKKLRSQV ADVARRDGPA CLCPELPGPL  120
PSESDEASLS RCSGEEGLVE ATVCCDDRPS LNRDLGQAVR AFGARVVRAE MATLAGRTRC  180
VLRIKWAGRE SEFGGLKRAL RMVVENRALD CGPDRVAVGD KRTRAYNSID TGVDGRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064697.11e-165PREDICTED: transcription factor bHLH106-like
TrEMBLA0A059BQQ81e-131A0A059BQQ8_EUCGR; Uncharacterized protein
STRINGVIT_18s0001g07410.t014e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-21bHLH family protein